Demographic figure for single cells

Source: R/Visualization.R

Create a demographic figure for the input single cell dataset for each of the subject

DemoPlot(
  eset,
  cluster,
  sample,
  select.ct,
  Palette = c("#999999", "#E69F00", "#56B4E9", "#009E73", "#F0E442", "#0072B2",
    "#D55E00", "#CC79A7")
)

Arguments

eset

ExpressionSet object of the single cell data
cluster

the variable name for "cell types" or "cluster name"
sample

the variable name for subjects
select.ct

the vector of cell types of interest, for example, c("alpha","beta")
Palette

the color palette to be used in the demographic figure

Value

A figure showing the number of cells and percentage of cell types for single cells after clustering